Humidity during incubation should be kept between 70-80%, and levels of oxygen and carbon dioxide should be as close to their regular atmospheric levels of 22% and .03% respectively as possible. CO2 levels of greater than 3000 ppm will begin to suppress mycelial growth and interfere with the incubation process, so proper ventilation systems are very important for this part of shiitake cultivation.
In Japan, shiitake incubation is roughly split into three periods. During the first period, you see the fastest pace of mycelial spread and high levels of metabolic activity in the substrate. It is very critical to maintain proper oxygen levels and ventilate properly during this period. Due to the mycelial growth, more heat is being generated during this period as well, so farmers typically maintain the room temperature 1~2 Celsius lower during this period to prevent the temperature within the substrate blocks from rising too much.
After roughly thirty days, you enter the second phase of the incubation. This is the point in which the mycelia have spread throughout the block and it has turned white or almost white. The second phase lasts up until approximately the seventy-day point, and during this phase mycelial growth falls off and the substrate begins to get broken down by enzymes secreted from the mycelium. At the start of the third phase, expose the substrate blocks to light. The third phase is when the substrate blocks will change in color again, from white to brown, and management of this period has a big impact on yields and pinning afterwards. Keep careful records of the incubation room conditions, and ensure that humidity stays between 70-80% and temperatures are stable at 22 C (or your strains ideal setting) while increasing ventilation to prevent CO2 levels from raising above 3000 ppm.
Consistent incubation of shiitake through the Japanese bag cultivation system is not that hard or extremely complicated; I’ve worked at large farms that do it for 400 metric tons or more of shiitake a year with minimal labor (a lot of the settings are automated and remotely monitored in a central control room). However, it does require climate control systems, sensors, clean spawn rooms, and autoclaves set to the proper settings. In Japan it is quite common for smaller growers to purchase already incubated blocks, in which case the only thing required is some fruiting rooms (typically just simple, pre-fab greenhouse), pickers, and packaging facilities. Another option is for groups of growers in the same region (in America this might be quite large and sometimes cross state boundaries), to pool resources to create joint incubation centers in order to benefit from economies of scales (it’s always cheaper to produce on large and consistent scales than piecemeal on a small scale).
HarvestingAn inexpensive prefabricated greenhouse and growing shelves are sufficient for fruiting rooms. The things to consider are: ease of movement, efficient use of space, cleaning, maintenance, and the flow of picked shiitake within your farm. Once picked, ideally shiitake should be quickly transferred to cold storage (a few degrees above freezing) until they are packaged, and after packaging, either returned to cold storage or shipped immediately.
Picking shiitake is also not difficult. Japanese farms emphasize physically picking shiitake from the blocks by pinching the base of the stems with your index finger and thumbs and then pulling, but this is frankly less efficient and more time-consuming not to mention more difficult. Most farms outside of Japan clip shiitake with scissors, which also saves time in the packaging room that in Japan is spent sorting through picked shiitake and cutting any large chunks of substrate off stems. The main trick is discerning when to start harvesting and spreading out the harvest over several days. The best quality of shiitake comes when the mushroom cap is just beginning to open. Fully opened shiitake tend to be a little lighter, have poorer shelf-life and are more likely to have insect-damage. What’s more, picking shiitake just as they start to open ensures a good balance of weight and shelf-life, as picking too early can mean picking fruiting bodies that would have grown larger and heavier.
In the packaging room packers should check for insects. Certain species of slugs are attracted to shiitake during warmer months, depending on region and local climate. Black or brown marks at the base of the stem or under the cap of the shiitake indicate that it is already starting to rot and not generally suitable for the fresh market. Shiitake in Japan are sorted into between 8~12 size grades, varying by region and market, which large growers get around by using specialized sorting machines. In practice, outside of Japan there usually no more than 3 size grades (small, medium, large), for growers to need to sort.